December: 366 papers in 2016

Dec 1:

Williams, Adam, Jorge Henao-Mejia, and Richard A. Flavell. “Editing the mouse genome using the CRISPR–Cas9 system.Cold Spring Harbor Protocols 2016, no. 2 (2016): pdb-top087536.

Dec 2:

Nicola, Nicos A., Warren S. Alexander, Douglas J. Hilton, and Ashley P. Ng. “In memoriam: Donald Metcalf (1929-2014)–A historical perspective of his contributions to hematology.Experimental hematology 43, no. 6 (2015): 425-427.

Dec 3:

Westerterp, Marit, Andrew J. Murphy, Mi Wang, Tamara A. Pagler, Yuliya Vengrenyuk, Mojdeh S. Kappus, Darren J. Gorman et al. “Deficiency of ATP-binding cassette transporters A1 and G1 in macrophages increases inflammation and accelerates atherosclerosis in mice.Circulation research 112, no. 11 (2013): 1456-1465.

Dec 4:

Baker, Paul J., Dave Boucher, Damien Bierschenk, Christina Tebartz, Paul G. Whitney, Damian B. D’Silva, Maria C. Tanzer et al. “NLRP3 inflammasome activation downstream of cytoplasmic LPS recognition by both caspase‐4 and caspase‐5.European journal of immunology 45, no. 10 (2015): 2918-2926.

Dec 5:

Kershaw, Nadia J., James M. Murphy, Nicholas PD Liau, Leila N. Varghese, Artem Laktyushin, Eden L. Whitlock, Isabelle S. Lucet, Nicos A. Nicola, and Jeffrey J. Babon. “SOCS3 binds specific receptor–JAK complexes to control cytokine signaling by direct kinase inhibition.Nature structural & molecular biology 20, no. 4 (2013): 469-476.

Dec 6:

Jenkins, Misty R., Jesse A. Rudd-Schmidt, Jamie A. Lopez, Kelly M. Ramsbottom, Stuart I. Mannering, Daniel M. Andrews, Ilia Voskoboinik, and Joseph A. Trapani. “Failed CTL/NK cell killing and cytokine hypersecretion are directly linked through prolonged synapse time.The Journal of experimental medicine 212, no. 3 (2015): 307-317.

Dec 7:

Berry, Richard, Stephen J. Headey, Melissa J. Call, James McCluskey, Clive A. Tregaskes, Jim Kaufman, Ruide Koh, Martin J. Scanlon, Matthew E. Call, and Jamie Rossjohn. “Structure of the Chicken CD3ϵδ/γ Heterodimer and Its Assembly with the αβT Cell Receptor.Journal of Biological Chemistry 289, no. 12 (2014): 8240-8251.

Dec 8:

Ernst, Christina, Jeremy Pike, Sarah J. Aitken, Hannah K. Long, Nils Eling, Lovorka Stojic, Michelle C. Ward et al. “Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis.eLife 5 (2016): e20235.

Dec 9:

Gibson, Daniel G., Hamilton O. Smith, Clyde A. Hutchison III, J. Craig Venter, and Chuck Merryman. “Chemical synthesis of the mouse mitochondrial genome.” nature methods 7, no. 11 (2010): 901-903.

Dec 10:

Bank, Claudia, Sebastian Matuszewski, Ryan T. Hietpas, and Jeffrey D. Jensen. “On the (un-) predictability of a large intragenic fitness landscape.bioRxiv (2016): 048769.

Dec 11:

Rosenfeld, Lior, Michael Heyne, Julia M. Shifman, and Niv Papo. “Protein Engineering by Combined Computational and In Vitro Evolution Approaches.Trends in biochemical sciences 41, no. 5 (2016): 421-433.

Dec 12:

Rost, Fabian, Aida Rodrigo Albors, Vladimir Mazurov, Lutz Brusch, Andreas Deutsch, Elly M. Tanaka, and Osvaldo Chara. “Accelerated cell divisions drive the outgrowth of the regenerating spinal cord in axolotls.eLife 5 (2016): e20357.

Dec 13:

Suto, Nobuyoshi, Amanda Laque, Genna L. De Ness, Grant E. Wagner, Debbie Watry, Tony Kerr, Eisuke Koya, Mark R. Mayford, Bruce T. Hope, and Friedbert Weiss. “Distinct memory engrams in the infralimbic cortex of rats control opposing environmental actions on a learned behavior.eLife 5 (2016): e21920.

Dec 14:

Alcock, Felicity, Phillip J. Stansfeld, Hajra Basit, Johann Habersetzer, Matthew AB Baker, Tracy Palmer, Mark I. Wallace, and Ben C. Berks. “Assembling the Tat protein translocase.eLife 5 (2016): e20718.

Dec 15:

Wells, Michael F., Max R. Salick, Ole Wiskow, Daniel J. Ho, Kathleen A. Worringer, Robert J. Ihry, Sravya Kommineni et al. “Genetic ablation of AXL does not protect human neural progenitor cells and cerebral organoids from Zika virus infection.Cell Stem Cell 19, no. 6 (2016): 703-708.

Dec 16:

Hutchison, Clyde A., Ray-Yuan Chuang, Vladimir N. Noskov, Nacyra Assad-Garcia, Thomas J. Deerinck, Mark H. Ellisman, John Gill et al. “Design and synthesis of a minimal bacterial genome.Science 351, no. 6280 (2016): aad6253.

Dec 17:

Telenti, Amalio, Levi CT Pierce, William H. Biggs, Julia di Iulio, Emily HM Wong, Martin M. Fabani, Ewen F. Kirkness et al. “Deep sequencing of 10,000 human genomes.Proceedings of the National Academy of Sciences (2016): 201613365.

Dec 18:

Zahn, Laura M., P. Mickey Williams, Jeremy P. Segal, Itay Tirosh, Benjamin Izar, Sanjay M. Prakadan, Marc H. Wadsworth II et al. “Single-cell expression profiles of melanoma.Science 183 (2016): 185.

Dec 19:

Telenti, Amalio, Brad A. Perkins, and J. Craig Venter. “Dynamics of an aging genome.Cell Metabolism 23, no. 6 (2016): 949-950.

Dec 20:

Vinson, Valda, Denes Hnisz, Abraham S. Weintraub, Daniel S. Day, Anne-Laure Valton, Rasmus O. Bak, Charles H. Li et al. “A proton pump in action.Science 351, no. 6280 (2016): 1411-1413.

Dec 21:

Tabebordbar, Mohammadsharif, Kexian Zhu, Jason KW Cheng, Wei Leong Chew, Jeffrey J. Widrick, Winston X. Yan, Claire Maesner et al. “In vivo gene editing in dystrophic mouse muscle and muscle stem cells.” Science 351, no. 6271 (2016): 407-411.

Dec 22:

Session, Adam M., Yoshinobu Uno, Taejoon Kwon, Jarrod A. Chapman, Atsushi Toyoda, Shuji Takahashi, Akimasa Fukui et al. “Genome evolution in the allotetraploid frog Xenopus laevis.Nature 538, no. 7625 (2016): 336-343.

Dec 23:

Chavez, Alejandro, Marcelle Tuttle, Benjamin W. Pruitt, Ben Ewen-Campen, Raj Chari, Dmitry Ter-Ovanesyan, Sabina J. Haque et al. “Comparative Analysis of Cas9 Activators Across Multiple Species.” (2016).

Dec 24:

Zhirnov, Victor, Reza M. Zadegan, Gurtej S. Sandhu, George M. Church, and William L. Hughes. “Nucleic acid memory.” Nature materials 15, no. 4 (2016): 366-370.

Dec 25:

Ostrov, Nili, Matthieu Landon, Marc Guell, Gleb Kuznetsov, Jun Teramoto, Natalie Cervantes, Minerva Zhou et al. “Design, synthesis, and testing toward a 57-codon genome.Science 353, no. 6301 (2016): 819-822.

Dec 26:

Shipman, Seth L., Jeff Nivala, Jeffrey D. Macklis, and George M. Church. “Molecular recordings by directed CRISPR spacer acquisition.Science (2016): aaf1175.

Dec 27:

Stranges, P. Benjamin, Mirkó Palla, Sergey Kalachikov, Jeff Nivala, Michael Dorwart, Shiv Kumar, Mintu Porel et al. “Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array.Proceedings of the National Academy of Sciences 113, no. 44 (2016): E6749-E6756.

Dec 28:

Fuller, Carl W., Shiv Kumar, Mintu Porel, Minchen Chien, Arek Bibillo, P. Benjamin Stranges, Michael Dorwart et al. “Real-time single-molecule electronic DNA sequencing by synthesis using polymer-tagged nucleotides on a nanopore array.Proceedings of the National Academy of Sciences 113, no. 19 (2016): 5233-5238.

Dec 29:

Deamer, David, Mark Akeson, and Daniel Branton. “Three decades of nanopore sequencing.Nature biotechnology 34, no. 5 (2016): 518-524.

Dec 30:

Kasianowicz, John J., and Sergey M. Bezrukov. “On’three decades of nanopore sequencing’.” Nature biotechnology 34, no. 5 (2016): 481-482.

Dec 31:

van Gent, Dik C., and Roland Kanaar. “Exploiting DNA repair defects for novel cancer therapies.Molecular Biology of the Cell 27, no. 14 (2016): 2145-2148.

 

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November: 366 papers in 2016

Nov 1:

Lander, L. J., and T. R. Parkin. “Counterexample to Euler’s conjecture on sums of like powers.Bulletin of the American Mathematical Society 72, no. 6 (1966): 1079.

Nov 2:

Coffey, Michael J., Brad E. Sleebs, Alessandro D. Uboldi, Alexandra Garnham, Magdalena Franco, Nicole D. Marino, Michael W. Panas et al. “An aspartyl protease defines a novel pathway for export of Toxoplasma proteins into the host cell.Elife 4 (2015): e10809.

Nov 3:

Boddey, Justin A., and Alan F. Cowman. “Plasmodium nesting: remaking the erythrocyte from the inside out.Annual review of microbiology 67 (2013): 243-269.

Nov 4:

Wang, Lei, and Peter G. Schultz. “Expanding the genetic code.” Angewandte chemie international edition 44, no. 1 (2005): 34-66.

Nov 5:

Sinkins, Steven P., and Fred Gould. “Gene drive systems for insect disease vectors.Nature Reviews Genetics 7, no. 6 (2006): 427-435.

Nov 6:

Gantz, Valentino M., Nijole Jasinskiene, Olga Tatarenkova, Aniko Fazekas, Vanessa M. Macias, Ethan Bier, and Anthony A. James. “Highly efficient Cas9-mediated gene drive for population modification of the malaria vector mosquito Anopheles stephensi.Proceedings of the National Academy of Sciences 112, no. 49 (2015): E6736-E6743.

Nov 7:

Ushiki, Takashi, Nicholas D. Huntington, Stefan P. Glaser, Hiu Kiu, Angela Georgiou, Jian-Guo Zhang, Donald Metcalf, Nicos A. Nicola, Andrew W. Roberts, and Warren S. Alexander. “Rapid Inflammation in Mice Lacking Both SOCS1 and SOCS3 in Hematopoietic Cells.PloS one 11, no. 9 (2016): e0162111.

Nov 8:

Teckchandani, Anjali, and Jonathan A. Cooper. “The ubiquitin-proteasome system regulates focal adhesions at the leading edge of migrating cells.eLife 5 (2016): e17440.

Nov 9:

Datlinger, Paul, Christian Schmidl, Andre F. Rendeiro, Peter Traxler, Johanna Klughammer, Linda Schuster, and Christoph Bock. “Pooled CRISPR screening with single-cell transcriptome read-out.bioRxiv (2016): 083774.

Nov 10:

Rautela, Jai, and Nicholas D. Huntington. “IL-15 signaling in NK cell cancer immunotherapy.” Current Opinion in Immunology 44 (2017): 1-6.

Nov 11:

Babon, Jeffrey J., Leila N. Varghese, and Nicos A. Nicola. “Inhibition of IL-6 family cytokines by SOCS3.” In Seminars in immunology, vol. 26, no. 1, pp. 13-19. Academic Press, 2014.

Nov 12:

Tan, Jenille M., and Scott E. Martin. “Exploring arrayed synthetic CRISPR for functional genomic screening.Cancer Research 76, no. 14 Supplement (2016): 73-73.

Nov 13:

Morozova, Olena, and Marco A. Marra. “Applications of next-generation sequencing technologies in functional genomics.Genomics 92, no. 5 (2008): 255-264.

Nov 14:

Gao, Jianjiong, James Lindsay, Stuart Watt, Istemi Bahceci, Pieter Lukasse, Adam Abeshouse, Hsiao-Wei Chen et al. “The cBioPortal for cancer genomics and its application in precision oncology.Cancer Research 76, no. 14 Supplement (2016): 5277-5277.

Nov 15:

Ulitsky, Igor. “Evolution to the rescue: using comparative genomics to understand long non-coding RNAs.Nature Reviews Genetics 17, no. 10 (2016): 601-614.

Nov 16:

Pang, Swee Heng Milon, Martina Minnich, Pradnya Gangatirkar, Zhen Zheng, Anja Ebert, Guangchun Song, R. A. Dickins et al. “PU. 1 cooperates with IRF4 and IRF8 to suppress pre-B-cell leukemia.Leukemia (2016).

Nov 17:

Babon, Jeffrey J., Jennifer K. Sabo, Alfreda Soetopo, Shenggen Yao, Michael F. Bailey, Jian-Guo Zhang, Nicos A. Nicola, and Raymond S. Norton. “The SOCS box domain of SOCS3: structure and interaction with the elonginBC-cullin5 ubiquitin ligase.Journal of molecular biology 381, no. 4 (2008): 928-940.

Nov 18:

Babon, Jeffrey J., Nicholas PD Liau, and Nadia J. Kershaw. “JAK1 Takes a FERM Hold of Type II Cytokine Receptors.Structure 24, no. 6 (2016): 840-842.

Nov 19:

Adzhubei, Ivan A., Steffen Schmidt, Leonid Peshkin, Vasily E. Ramensky, Anna Gerasimova, Peer Bork, Alexey S. Kondrashov, and Shamil R. Sunyaev. “A method and server for predicting damaging missense mutations.” Nature methods 7, no. 4 (2010): 248-249.

Nov 20:

Rusk, Nicole. “Genomics: CRISPR gain-of-function screens.Nature methods 12, no. 2 (2015): 102-103.

Nov 21:

Gibson, Daniel G., Gwynedd A. Benders, Cynthia Andrews-Pfannkoch, Evgeniya A. Denisova, Holly Baden-Tillson, Jayshree Zaveri, Timothy B. Stockwell et al. “Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.science 319, no. 5867 (2008): 1215-1220.

Nov 22:

Biggin, M. D., T. J. Gibson, and G. F. Hong. “Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.” Proceedings of the National Academy of Sciences 80, no. 13 (1983): 3963-3965.

Nov 23:

Gibson, Daniel G., Hamilton O. Smith, Clyde A. Hutchison III, J. Craig Venter, and Chuck Merryman. “Chemical synthesis of the mouse mitochondrial genome.nature methods 7, no. 11 (2010): 901-903.

Nov 24:

Gibson, Daniel G. “Enzymatic assembly of overlapping DNA fragments.Methods Enzymol 498 (2011): 349-361.

Nov 25:

Upper, Dennis. “THE UNSUCCESSFUL SELF‐TREATMENT OF A CASE OF “WRITER’S BLOCK” 1.” Journal of applied behavior analysis 7, no. 3 (1974): 497-497.

Nov 26:

A comprehensive overview of chemical-free consumer products Alexander F. G. Goldberg

Nov 27:

Stojković, Biljana, Ahmed Sayadi, Mirko Đorđević, Jelena Jović, Uroš Savković, and Göran Arnqvist. “Divergent evolution of life span associated with mitochondrial DNA evolution.Evolution (2016).

Nov 28:

Rothberg, Bonnie E. Gould, and Jonathan M. Rothberg. “Massively Parallel (“Next-Generation”) DNA Sequencing.” Clinical chemistry 61, no. 7 (2015): 997-998.

Nov 29:

Chinwalla, Asif T., Lisa L. Cook, Kimberly D. Delehaunty, Ginger A. Fewell, Lucinda A. Fulton, Robert S. Fulton, Tina A. Graves et al. “Initial sequencing and comparative analysis of the mouse genome.Nature 420, no. 6915 (2002): 520-562.

Nov 30:

Wasserman, Wyeth W., Michael Palumbo, William Thompson, James W. Fickett, and Charles E. Lawrence. “Human-mouse genome comparisons to locate regulatory sites.Nature genetics 26, no. 2 (2000): 225-228.

 

 

 

October: 366 papers in 2016

Oct 1:

Mallon, John, and Scott Bailey. “A molecular arms race: new insights into anti-CRISPR mechanisms.Nature Structural & Molecular Biology 23, no. 9 (2016): 765-766.

Oct 2:

Lagarde, Julien, Barbara Uszczynska-Ratajczak, Javier Santoyo-Lopez, Jose Manuel Gonzalez, Electra Tapanari, Jonathan M. Mudge, Charles A. Steward et al. “Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq).Nature communications 7 (2016).

Oct 3:

Fan, Chenguang, Kevan Ip, and Dieter Söll. “Expanding the genetic code of Escherichia coli with phosphotyrosine.FEBS letters 590, no. 17 (2016): 3040-3047.

Oct 4:

Lajoie, M. J., D. Söll, and G. M. Church. “Overcoming challenges in engineering the genetic code.Journal of molecular biology 428, no. 5 (2016): 1004-1021.

Oct 5:

Jewett, Michael C., and Vincent Noireaux. “Synthetic biology: Tailor-made genetic codes.” Nature chemistry 8, no. 4 (2016): 291-292.

Oct 6:

Qiu, Jing, Jamie McQueen, Bilada Bilican, Owen Dando, Dario Magnani, Karolina Punovuori, Bhuvaneish T. Selvaraj et al. “Evidence for evolutionary divergence of activity-dependent gene expression in developing neurons.” eLife 5 (2016): e20337.

Oct 7:

Venter, J. Craig, Mark D. Adams, Eugene W. Myers, Peter W. Li, Richard J. Mural, Granger G. Sutton, Hamilton O. Smith et al. “The sequence of the human genome.science 291, no. 5507 (2001): 1304-1351.

Oct 8:

Roby, Justin Alexander, Brian C. Keller, Hilario J. Ramos, Michael S. Diamond, and Michael J. Gale. “The JAK/STAT signaling cascades of multiple cytokines are dysregulated during West Nile virus infection.The Journal of Immunology 196, no. 1 Supplement (2016): 217-38.

Oct 9:

Yang, Hairu, and Dan Hultmark. “JAK/STAT and insulin signaling in Drosophila muscles regulate cellular immune responses against parasitoid wasp infection.” (2016).

Oct 10:

Seldon, Crystal S., Lauren E. Colbert, William A. Hall, Sarah B. Fisher, David S. Yu, and Jerome C. Landry. “Chromodomain-helicase-DNA binding protein 5, 7 and pronecrotic mixed lineage kinase domain-like protein serve as potential prognostic biomarkers in patients with resected pancreatic adenocarcinomas.” World journal of gastrointestinal oncology 8, no. 4 (2016): 358.

Oct 11:

Kusano, Seisuke, Mutsuko Kukimoto‐Niino, Nobumasa Hino, Noboru Ohsawa, Masashi Ikutani, Satoshi Takaki, Kensaku Sakamoto et al. “Structural basis of interleukin‐5 dimer recognition by its α receptor.Protein Science 21, no. 6 (2012): 850-864.

Oct 12:

Ernst, Matthias, and Tracy L. Putoczki. “Molecular Pathways: IL11 as a Tumor-Promoting Cytokine—Translational Implications for Cancers.Clinical Cancer Research 20, no. 22 (2014): 5579-5588.

Oct 13:

Robinson, Mark D., Davis J. McCarthy, and Gordon K. Smyth. “edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.Bioinformatics 26, no. 1 (2010): 139-140.

Oct 14:

Babon, Jeffrey J., Jennifer K. Sabo, Jian-Guo Zhang, Nicos A. Nicola, and Raymond S. Norton. “The SOCS box encodes a hierarchy of affinities for Cullin5: implications for ubiquitin ligase formation and cytokine signalling suppression.Journal of molecular biology 387, no. 1 (2009): 162-174.

Oct 15:

Owen, Dianne, and L. C. Kühn. “Noncoding 3’sequences of the transferrin receptor gene are required for mRNA regulation by iron.” The EMBO Journal 6, no. 5 (1987): 1287.

Oct 16:

Privalov, Petkr L., Pedro L. Mateo, Nikolai N. Khechinashvili, Valentin M. Stepanov, and Lyudmila P. Revina. “Comparative thermodynamic study of pepsinogen and pepsin structure.Journal of molecular biology 152, no. 2 (1981): 445-464.

Oct 17:

Abad‐Zapatero, Cele, Timothy J. Rydel, and John Erickson. “Revised 2.3 Å structure of porcine pepsin: evidence for a flexible subdomain.Proteins: Structure, Function, and Bioinformatics 8, no. 1 (1990): 62-81.

Oct 18:

Turpin, David H. “Effects of inorganic N availability on algal photosynthesis and carbon metabolism.” Journal of Phycology 27, no. 1 (1991): 14-20.

Oct 19:

Peisker, M. “Models of carbon metabolism in C3‐C4 intermediate plants as applied to the evolution of C4 photosynthesis.Plant, Cell & Environment 9, no. 8 (1986): 627-635.

Oct 20:

Kanyenda, Limbikani J., Guiseppe Verdile, Ralph Martins, Bruno P. Meloni, Joanne Chieng, Francis Mastaglia, Simon M. Laws, Ryan S. Anderton, and Sherif Boulos. “Is cholesterol and amyloid-β stress induced CD147 expression a protective response? Evidence that extracellular cyclophilin a mediated neuroprotection is reliant on CD147.” Journal of Alzheimer’s Disease 39, no. 3 (2014): 545-556.

Oct 21:

Meloni, Bruno P., Laura M. Brookes, Vince W. Clark, Jane L. Cross, Adam B. Edwards, Ryan S. Anderton, Richard M. Hopkins, Katrin Hoffmann, and Neville W. Knuckey. “Poly-arginine and arginine-rich peptides are neuroprotective in stroke models.” Journal of Cerebral Blood Flow & Metabolism 35, no. 6 (2015): 993-1004.

Oct 22:

Allegre, Claude J., and Stephen H. Schneider. “The evolution of the Earth.Scientific American 271 (1994): 44-51.

Oct 23:

Margulis, Lynn. “Symbiosis in cell evolution: Life and its environment on the early earth.” (1981).

Oct 24:

Li, Ming O., and Alexander Y. Rudensky. “T cell receptor signalling in the control of regulatory T cell differentiation and function.Nature Reviews Immunology 16, no. 4 (2016): 220-233.

Oct 25:

Takeuchi, Osamu. “Posttranscriptional Regulation of Cytokine mRNA Controls the Initiation and Resolution of Inflammation.Chronic Inflammation: Mechanisms and Regulation (2016): 319.

Oct 26:

Haskett, Timothy L., Jason J. Terpolilli, Amanuel Bekuma, Graham W. O’Hara, John T. Sullivan, Penghao Wang, Clive W. Ronson, and Joshua P. Ramsay. “Assembly and transfer of tripartite integrative and conjugative genetic elements.Proceedings of the National Academy of Sciences (2016): 201613358.

Oct 27:

Bombicz, Petra. “X-ray crystallography.” Crystallography Reviews 22, no. 1 (2016): 79-81.

Oct 28:

Shen, Jian-Ren. “Crystallography: Resolution beyond the diffraction limit.” Nature 530, no. 7589 (2016): 168-169.

Oct 29:

Bedi, Rajiv K., Chandan Patel, Vandana Mishra, Huogen Xiao, Rickey Y. Yada, and Prasenjit Bhaumik. “Understanding the structural basis of substrate recognition by Plasmodium falciparum plasmepsin V to aid in the design of potent inhibitors.” Scientific Reports 6 (2016).

Oct 30:

Orlenko, Alena, Russell A. Hermansen, and David A. Liberles. “Flux Control in Glycolysis Varies Across the Tree of Life.” Journal of molecular evolution 82, no. 2-3 (2016): 146-161.

Oct 31:

Havird, Justin C., and Daniel B. Sloan. “The roles of mutation, selection, and expression in determining relative rates of evolution in mitochondrial vs. nuclear genomes.” Molecular Biology and Evolution (2016): msw185.

 

September: 366 papers in 2016

Sept 1:

Schindler, Christian, David E. Levy, and Thomas Decker. “JAK-STAT signaling: from interferons to cytokines.” Journal of Biological Chemistry 282, no. 28 (2007): 20059-20063.

Sept 2:

Breems, Dimitri A., Wim LJ Van Putten, Georgine E. De Greef, Shama L. Van Zelderen-Bhola, Klasien BJ Gerssen-Schoorl, Clemens HM Mellink, Aggie Nieuwint et al. “Monosomal karyotype in acute myeloid leukemia: a better indicator of poor prognosis than a complex karyotype.Journal of Clinical Oncology 26, no. 29 (2008): 4791-4797.

Sept 3:

Stevenson, Brian J., Nelson Rhodes, Beverly Errede, and George F. Sprague. “Constitutive mutants of the protein kinase STE11 activate the yeast pheromone response pathway in the absence of the G protein.Genes & development 6, no. 7 (1992): 1293-1304.

Sept 4:

Armstrong, John B., Julius Adler, and Margaret M. Dahl. “Nonchemotactic mutants of Escherichia coli.Journal of bacteriology 93, no. 1 (1967): 390-398.

Sept 5:

Armstrong, John B., and Julius Adler. “Genetics of motility in Escherichia coli: complementation of paralyzed mutants.Genetics 56, no. 3 (1967): 363.

Sept 6:

Horvitz, H. Robert, and John E. Sulston. “Isolation and genetic characterization of cell-lineage mutants of the nematode Caenorhabditis elegans.” Genetics 96, no. 2 (1980): 435-454.

Sept 7:

Dickson, B., F. Sprenger, and E. Hafen. “Prepattern in the developing Drosophila eye revealed by an activated torso–sevenless chimeric receptor.Genes & Development 6, no. 12a (1992): 2327-2339.

Sept 8:

Jinek, Martin, Alexandra East, Aaron Cheng, Steven Lin, Enbo Ma, and Jennifer Doudna. “RNA-programmed genome editing in human cells.elife 2 (2013): e00471.

Sept 9:

Larson, Matthew H., Luke A. Gilbert, Xiaowo Wang, Wendell A. Lim, Jonathan S. Weissman, and Lei S. Qi. “CRISPR interference (CRISPRi) for sequence-specific control of gene expression.” Nature protocols 8, no. 11 (2013): 2180-2196.

Sept 10:

Bedell, Victoria M., Stephanie E. Westcot, and Stephen C. Ekker. “Lessons from morpholino-based screening in zebrafish.Briefings in functional genomics (2011): elr021.

Sept 11:

Sessions, Allen, Ellen Burke, Gernot Presting, George Aux, John McElver, David Patton, Bob Dietrich et al. “A high-throughput Arabidopsis reverse genetics system.The Plant Cell 14, no. 12 (2002): 2985-2994.

Sept 12:

Krebs, Danielle L., Donald Metcalf, Tobias D. Merson, Anne K. Voss, Tim Thomas, Jian-Guo Zhang, Steven Rakar et al. “Development of hydrocephalus in mice lacking SOCS7.” Proceedings of the National Academy of Sciences of the United States of America 101, no. 43 (2004): 15446-15451.

Sept 13:

Bao, Riyue, Lei Huang, Jorge Andrade, Wei Tan, Warren A. Kibbe, Hongmei Jiang, and Gang Feng. “Review of current methods, applications, and data management for the bioinformatics analysis of whole exome sequencing.” Cancer informatics (2014): 67-83.

Sept 14:

Starr, Robyn, Donald Metcalf, Andrew G. Elefanty, Marta Brysha, Tracy A. Willson, Nicos A. Nicola, Douglas J. Hilton, and Warren S. Alexander. “Liver degeneration and lymphoid deficiencies in mice lacking suppressor of cytokine signaling-1.Proceedings of the National Academy of Sciences 95, no. 24 (1998): 14395-14399.

Sept 15:

Eshel, Ilan. “Selection on sex ratio and the evolution of sex determination.” Heredity 34, no. 3 (1975): 351-361.

Sept 16:

Pinker, Steven. “How the mind works.” Annals of the New York Academy of Sciences 882, no. 1 (1999): 119-127.

Sept 17:

Babon, Jeffrey J., Isabelle S. Lucet, James M. Murphy, Nicos A. Nicola, and Leila N. Varghese. “The molecular regulation of Janus kinase (JAK) activation.Biochemical Journal 462, no. 1 (2014): 1-13.

Sept 18:

Xu, Yibin, Nadia J. Kershaw, Cindy S. Luo, Priscilla Soo, Michael J. Pocock, Peter E. Czabotar, Douglas J. Hilton, Nicos A. Nicola, Thomas PJ Garrett, and Jian-Guo Zhang. “Crystal Structure of the Entire Ectodomain of gp130 INSIGHTS INTO THE MOLECULAR ASSEMBLY OF THE TALL CYTOKINE RECEPTOR COMPLEXES.” Journal of Biological Chemistry 285, no. 28 (2010): 21214-21218.

Sept 19:

Wong, Gordon G., and Steven C. Clark. “Multiple actions of interleukin 6 within a cytokine network.Immunology today 9, no. 5 (1988): 137-139.

Sept 20:

Dietrich, W. F., J. Miller, R. Steen, M. A. Merchant, D. DamronBoles, Z. Husain, R. Dredge et al. “A Comprehensive Genetic-Map of the Mouse Genome (Vol 380, Pg 149, 1996).” Nature 381, no. 6578 (1996): 172-172.

Sept 21:

Levy, David E., D. S. Kessler, Richard Pine, and J. E. Darnell. “Cytoplasmic activation of ISGF3, the positive regulator of interferon-alpha-stimulated transcription, reconstituted in vitro.Genes & Development 3, no. 9 (1989): 1362-1371.

Sept 22:

Levy, David E., Daniel S. Kessler, Richard Pine, Nancy Reich, and J. E. Darnell. “Interferon-induced nuclear factors that bind a shared promoter element correlate with positive and negative transcriptional control.Genes & development 2, no. 4 (1988): 383-393.

Sept 23:

Li, Heng, and Richard Durbin. “Fast and accurate short read alignment with Burrows–Wheeler transform.Bioinformatics 25, no. 14 (2009): 1754-1760.

Sept 24:

Zamore, Phillip D., Thomas Tuschl, Phillip A. Sharp, and David P. Bartel. “RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.Cell 101, no. 1 (2000): 25-33.

Sept 25:

Porebski, Benjamin T., Shani Keleher, Jeffrey J. Hollins, Adrian A. Nickson, Emilia M. Marijanovic, Natalie A. Borg, Mauricio GS Costa et al. “Smoothing a rugged protein folding landscape by sequence-based redesign.Scientific Reports 6 (2016): 33958.

Sept 26:

Jafree, Daniyal J., Katharine Whitehurst, and Shivanchan Rajmohan. “How to approach supervisors for research opportunities.Annals of Medicine and Surgery (2016).

Sept 27:

Shendure, Jay. “Human genomics: A deep dive into genetic variation.Nature 536, no. 7616 (2016): 277-278.

Sept 28:

Pinker, Steven. “How the mind works.” Annals of the New York Academy of Sciences 882,

Sept 29:

Sørensen, Henrik Toft. “I-determinants for a successful PhD or postdoctoral outcome.Clinical Epidemiology 8 (2016): 297.

Sept 30:

Isaacs, Alick, and Jean Lindenmann. “Virus interference. I. The interferon.” Proceedings of the Royal Society of London B: Biological Sciences 147, no. 927 (1957): 258-267.

 

August: 366 papers in 2016

As one of my 2016 scientific resolutions I will be reading one paper every day of the year and posting each here (hopefully) daily.

 

Aug 1:

Yaffe, Michael B. “Reproducibility in science.” Sci. Signal. 8, no. 371 (2015): eg5-eg5.

Aug 2:

Naegle, Kristen, Nancy R. Gough, and Michael B. Yaffe. “Criteria for biological reproducibility: what does” n” mean?.Science signaling 8, no. 371 (2015): fs7.

Aug 3:

Parnas, Oren, Marko Jovanovic, Thomas M. Eisenhaure, Rebecca H. Herbst, Atray Dixit, Chun Jimmie Ye, Dariusz Przybylski et al. “A genome-wide CRISPR screen in primary immune cells to dissect regulatory networks.” Cell 162, no. 3 (2015): 675-686.

Aug 4:

Evers, Bastiaan, Katarzyna Jastrzebski, Jeroen PM Heijmans, Wipawadee Grernrum, Roderick L. Beijersbergen, and Rene Bernards. “CRISPR knockout screening outperforms shRNA and CRISPRi in identifying essential genes.Nature biotechnology (2016).

Aug 5:

Housden, Benjamin E., and Norbert Perrimon. “Comparing CRISPR and RNAi-based screening technologies.Nature Biotechnology 34, no. 6 (2016): 621-623.

Aug 6:

Qi, Xiaolong, Jiwei Zhang, Yongzhao Zhao, Tao Chen, Yi Xiang, Jialiang Hui, Danxian Cai et al. “The applications of CRISPR screen in functional genomics.” Briefings in Functional Genomics (2016): elw020.

Aug 7:

Vickers, Claudia E. “The minimal genome comes of age.” Nature Biotechnology 34, no. 6 (2016): 623-624.

Aug 8:

Nam, Jae-Yong, Nayoung KD Kim, Sang Cheol Kim, Je-Gun Joung, Ruibin Xi, Semin Lee, Peter J. Park, and Woong-Yang Park. “Evaluation of somatic copy number estimation tools for whole-exome sequencing data.Briefings in bioinformatics 17, no. 2 (2016): 185-192.

Aug 9:

Belkadi, Aziz, Alexandre Bolze, Yuval Itan, Aurelie Cobat, Quentin B. Vincent, Alexander Antipenko, Lei Shang, Bertrand Boisson, Jean-Laurent Casanova, and Laurent Abel. “Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants.Proceedings of the National Academy of Sciences 112, no. 17 (2015): 5473-5478.

Aug 10:

Law, Charity W., Monther Alhamdoosh, Shian Su, Gordon K. Smyth, and Matthew E. Ritchie. “RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.F1000Research 5 (2016).

Aug 11:

Schurch, Nicholas J., Pietá Schofield, Marek Gierliński, Christian Cole, Alexander Sherstnev, Vijender Singh, Nicola Wrobel et al. “How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?.” RNA 22, no. 6 (2016): 839-851.

Aug 12:

Delconte, Rebecca B., Tatiana B. Kolesnik, Laura F. Dagley, Jai Rautela, Wei Shi, Eva M. Putz, Kimberley Stannard et al. “CIS is a potent checkpoint in NK cell-mediated tumor immunity.Nature immunology (2016).

Aug 13:

Gamon, L. F., J. M. White, and U. Wille. “Oxidative damage of aromatic dipeptides by the environmental oxidants NO 2˙ and O 3.Organic & biomolecular chemistry 12, no. 41 (2014): 8280-8287.

Aug 14:

Cerami, Ethan, Jianjiong Gao, Ugur Dogrusoz, Benjamin E. Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen et al. “The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.Cancer discovery 2, no. 5 (2012): 401-404.

Aug 15:

Pham, Thu-Hang, Julia Minderjahn, Christian Schmidl, Helen Hoffmeister, Sandra Schmidhofer, Wei Chen, Gernot Längst, Christopher Benner, and Michael Rehli. “Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU. 1.Nucleic acids research (2013): gkt355.

Aug 16:

Nakamura, Tetsuya, Andrew R. Gehrke, Justin Lemberg, Julie Szymaszek, and Neil H. Shubin. “Digits and fin rays share common developmental histories.” Nature (2016).

Aug 17:

de Graaf, Carolyn A., Jarny Choi, Tracey M. Baldwin, Jessica E. Bolden, Kirsten A. Fairfax, Aaron J. Robinson, Christine Biben et al. “Haemopedia: An Expression Atlas of Murine Hematopoietic Cells.Stem Cell Reports (2016).

Aug 18:

Dobin, Alexander, Carrie A. Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, and Thomas R. Gingeras. “STAR: ultrafast universal RNA-seq aligner.Bioinformatics 29, no. 1 (2013): 15-21.

Aug 19:

Muniz, João RC, Kunde Guo, Nadia J. Kershaw, Vikram Ayinampudi, Frank von Delft, Jeffrey J. Babon, and Alex N. Bullock. “Molecular architecture of the ankyrin SOCS box family of Cul5-dependent E3 ubiquitin ligases.Journal of molecular biology 425, no. 17 (2013): 3166-3177.

Aug 20:

Guillerey, Camille, Nicholas D. Huntington, and Mark J. Smyth. “Targeting natural killer cells in cancer immunotherapy.Nature Immunology 17, no. 9 (2016): 1025-1036.

Aug 21:

Masuda, Kazuya, and Tadamitsu Kishimoto. “CD5: A New Partner for IL-6.” Immunity 44, no. 4 (2016): 720-722.

Aug 22:

Moss-Racusin, Corinne A., Jojanneke van der Toorn, John F. Dovidio, Victoria L. Brescoll, Mark J. Graham, and Jo Handelsman. “A “Scientific Diversity” Intervention to Reduce Gender Bias in a Sample of Life Scientists.CBE-Life Sciences Education 15, no. 3 (2016): ar29.

Aug 23:

Obenauer, John C., Lewis C. Cantley, and Michael B. Yaffe. “Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.Nucleic acids research 31, no. 13 (2003): 3635-3641.

Aug 24:

Chen, Chang-Zheng, Ling Li, Harvey F. Lodish, and David P. Bartel. “MicroRNAs modulate hematopoietic lineage differentiation.science 303, no. 5654 (2004): 83-86.

Aug 25:

Mueckler, Mike, Carla Caruso, Stephen A. Baldwin, Maria Panico, Ian Blench, Howard R. Morris, W. Jeffrey Allard, Gustav E. Lienhard, and Harvey F. Lodish. “Sequence and structure of a human glucose transporter.Science 229, no. 4717 (1985): 941-945.

Aug 26:

Lodish, Harvey F. “Accommodating family life: mentoring future female faculty members.Trends in cell biology 25, no. 3 (2015): 109-111.

Aug 27:

de Koning-Ward, Tania F., Paul R. Gilson, and Brendan S. Crabb. “Advances in molecular genetic systems in malaria.” Nature Reviews Microbiology 13, no. 6 (2015): 373-387.

Aug 28:

Koonin, Eugene V., and Mart Krupovic. “Evolution of adaptive immunity from transposable elements combined with innate immune systems.” Nature Reviews Genetics 16, no. 3 (2015): 184-192.

Aug 29:

Sulonen, Anna-Maija, Pekka Ellonen, Henrikki Almusa, Maija Lepistö, Samuli Eldfors, Sari Hannula, Timo Miettinen et al. “Comparison of solution-based exome capture methods for next generation sequencing.” Genome biology 12, no. 9 (2011): 1.

Aug 30:

Hodge, David R., Elaine M. Hurt, and William L. Farrar. “The role of IL-6 and STAT3 in inflammation and cancer.” European journal of cancer 41, no. 16 (2005): 2502-2512.

Aug 31:

Shuai, Ke, and Bin Liu. “Regulation of JAK–STAT signalling in the immune system.Nature Reviews Immunology 3, no. 11 (2003): 900-911.

July: 366 papers in 2016

As one of my 2016 scientific resolutions I will be reading one paper every day of the year and posting each here (hopefully) daily. Along with me, Natalie Matosin, Martin Engel and Lauren Drogos will also be doing the same and likewise posting each paper on their respective blogs. You can also follow the three of us and the others who are joining us using the tag #366papers on twitter. Also find Dr Lauren Drogos here, Dr Natalie Matosin here and find Dr Martin Engel here.

 

July 1:

Wilson, Christopher GM, Thomas J. Magliery, and Lynne Regan. “Detecting protein-protein interactions with GFP-fragment reassembly.Nature methods 1, no. 3 (2004): 255-262.

July 2:

Gerlier, Denis, and Nicole Thomasset. “Use of MTT colorimetric assay to measure cell activation.Journal of immunological methods 94, no. 1-2 (1986): 57-63.

July 3:

Quail, Michael A., Iwanka Kozarewa, Frances Smith, Aylwyn Scally, Philip J. Stephens, Richard Durbin, Harold Swerdlow, and Daniel J. Turner. “A large genome center’s improvements to the Illumina sequencing system.Nature methods 5, no. 12 (2008): 1005-1010.

July 4:

Bonnici, Vincenzo, and Vincenzo Manca. “Informational laws of genome structures.Scientific Reports 6 (2016): 28840.

July 5:

Wang, J., E. Santiago, and A. Caballero. “Prediction and estimation of effective population size.Heredity (2016).

July 6:

Zhou, Honglin, Min Xu, Qian Huang, Adam T. Gates, Xiaohua D. Zhang, John C. Castle, Erica Stec et al. “Genome-scale RNAi screen for host factors required for HIV replication.” Cell host & microbe 4, no. 5 (2008): 495-504.

July 7:

Luo, Ji, Michael J. Emanuele, Danan Li, Chad J. Creighton, Michael R. Schlabach, Thomas F. Westbrook, Kwok-Kin Wong, and Stephen J. Elledge. “A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene.” Cell 137, no. 5 (2009): 835-848.

July 8:

Mohseni, Morvarid, Jianlong Sun, Allison Lau, Stephen Curtis, Jeffrey Goldsmith, Victor L. Fox, Chongjuan Wei et al. “A genetic screen identifies an LKB1–MARK signalling axis controlling the Hippo–YAP pathway.” Nature cell biology 16, no. 1 (2014): 108-117.

July 9:

Hoi, Charlene SL, Wenjun Xiong, and Ilaria Rebay. “Retinal Axon Guidance Requires Integration of Eya and the JAK/STAT Pathway into Phosphotyrosine-Based Signaling Circuitries in Drosophila.” Genetics (2016): genetics-115.

July 10:

Stark, George R., and James E. Darnell. “The JAK-STAT pathway at twenty.” Immunity 36, no. 4 (2012): 503-514.

July 11:

Thorvaldsdóttir, Helga, James T. Robinson, and Jill P. Mesirov. “Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.” Briefings in bioinformatics 14, no. 2 (2013): 178-192.

July 12:

Krzywinski, Martin, Jacqueline Schein, Inanc Birol, Joseph Connors, Randy Gascoyne, Doug Horsman, Steven J. Jones, and Marco A. Marra. “Circos: an information aesthetic for comparative genomics.Genome research 19, no. 9 (2009): 1639-1645.

July 13:

Marguerat, Samuel, and Jürg Bähler. “RNA-seq: from technology to biology.” Cellular and molecular life sciences 67, no. 4 (2010): 569-579.

July 14:

Cirulli, Elizabeth T., Brittany N. Lasseigne, Slavé Petrovski, Peter C. Sapp, Patrick A. Dion, Claire S. Leblond, Julien Couthouis et al. “Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.Science 347, no. 6229 (2015): 1436-1441.

July 15:

Loman, Nicholas J., and Mick Watson. “Successful test launch for nanopore sequencing.” Nature methods 12, no. 4 (2015): 303-304.

July 16:

Robert, Christelle, and Mick Watson. “Errors in RNA-Seq quantification affect genes of relevance to human disease.Genome biology 16, no. 1 (2015): 1.

July 17:

Uyeda, Josef C., Daniel S. Caetano, and Matthew W. Pennell. “Comparative analysis of principal components can be misleading.Systematic biology (2015): syv019.

July 18:

Sakakibara, Daisuke, Atsuko Sasaki, Teppei Ikeya, Junpei Hamatsu, Tomomi Hanashima, Masaki Mishima, Masatoshi Yoshimasu et al. “Protein structure determination in living cells by in-cell NMR spectroscopy.Nature 458, no. 7234 (2009): 102-105

July 19:

Law, Charity W., Yunshun Chen, Wei Shi, and Gordon K. Smyth. “Voom: precision weights unlock linear model analysis tools for RNA-seq read counts.Genome biology 15, no. 2 (2014): 1.

July 20:

Shalem, Ophir, Neville E. Sanjana, and Feng Zhang. “High-throughput functional genomics using CRISPR-Cas9.” Nature Reviews Genetics 16, no. 5 (2015): 299-311.

July 21:

Jones, Bryony. “Chromosome biology: Diverse evolution of sex chromosomes in flies.Nature Reviews Genetics 16, no. 6 (2015): 316-317.

July 22:

Wright, Jason B., and Neville E. Sanjana. “CRISPR Screens to Discover Functional Noncoding Elements.Trends in Genetics (2016)

July 23:

Trenker, R., M. J. Call, and M. E. Call. “Progress and prospects for structural studies of transmembrane interactions in single-spanning receptors.” Current opinion in structural biology 39 (2016): 115.

July 24:

Lee, Michael J., and Michael B. Yaffe. “Protein regulation in signal transduction.” Cold Spring Harbor perspectives in biology 8, no. 6 (2016): a005918.

July 25:

Yaffe, Michael B. “How to “cell” a genomic or proteomic screen.” Science signaling 1, no. 47 (2008): eg9-eg9.

July 26:

Yaffe, Michael B., and Nancy R. Gough. “Leveraging signaling research to understand and treat disease.Sci. Signal. 9, no. 421 (2016): eg4-eg4.

July 27:

Roberts, Kathryn G., Yongjin Li, Debbie Payne-Turner, Richard C. Harvey, Yung-Li Yang, Deqing Pei, Kelly McCastlain et al. “Targetable kinase-activating lesions in Ph-like acute lymphoblastic leukemia.New England journal of medicine 371, no. 11 (2014): 1005-1015.

July 28:

Zhang, Xiaotian, Jianzhong Su, Mira Jeong, Myunggon Ko, Yun Huang, Hyun Jung Park, Anna Guzman et al. “DNMT3A and TET2 compete and cooperate to repress lineage-specific transcription factors in hematopoietic stem cells.Nature Genetics (2016).

July 29:

Weinstein, John N., Eric A. Collisson, Gordon B. Mills, Kenna R. Mills Shaw, Brad A. Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M. Stuart, and Cancer Genome Atlas Research Network. “The cancer genome atlas pan-cancer analysis project.Nature genetics 45, no. 10 (2013): 1113-1120.

July 30:

Lawrence, Michael S., Petar Stojanov, Paz Polak, Gregory V. Kryukov, Kristian Cibulskis, Andrey Sivachenko, Scott L. Carter et al. “Mutational heterogeneity in cancer and the search for new cancer-associated genes.Nature 499, no. 7457 (2013): 214-218.

July 31:

Wright, Peter E., and H. Jane Dyson. “Intrinsically disordered proteins in cellular signalling and regulation.Nature Reviews Molecular Cell Biology 16, no. 1 (2015): 18-29.

June: 366 papers in 2016

 

As one of my 2016 scientific resolutions I will be reading one paper every day of the year and posting each here (hopefully) daily. Along with me, Natalie Matosin, Martin Engel and Lauren Drogos will also be doing the same and likewise posting each paper on their respective blogs. You can also follow the three of us and the others who are joining us using the tag #366papers on twitter. Also find Dr Lauren Drogos here, Dr Natalie Matosin here and find Dr Martin Engel here.

 

June 1:

Gordon, Siamon. “Pattern recognition receptors: doubling up for the innate immune response.Cell 111, no. 7 (2002): 927-930.

June 2:

Kirkpatrick, Mark. “Sexual selection and the evolution of female choice.” Evolution (1982): 1-12.

June 3:

Dobzhansky, Theodosius. “Nothing in biology makes sense except in the light of evolution.” The american biology teacher 75, no. 2 (2013): 87-91.

June 4:

Barrios-Rodiles, Miriam, Kevin R. Brown, Barish Ozdamar, Rohit Bose, Zhong Liu, Robert S. Donovan, Fukiko Shinjo et al. “High-throughput mapping of a dynamic signaling network in mammalian cells.” Science 307, no. 5715 (2005): 1621-1625.

June 5:

Wittig, Ilka, Hans-Peter Braun, and Hermann Schägger. “Blue native PAGE.” Nature Protocols 1 (2006): 418-428.

June 6:

Evason, Kimberley J., Macrina T. Francisco, Vladislava Juric, Sanjeev Balakrishnan, Maria del Pilar Lopez Pazmino, John D. Gordan, Sanjay Kakar, Jan Spitsbergen, Andrei Goga, and Didier YR Stainier. “Identification of chemical inhibitors of β-catenin-driven liver tumorigenesis in zebrafish.PLoS Genet 11, no. 7 (2015): e1005305.

June 7, 8, 9, 10 and 11 (Sorry, but it is really long):

Darlington, Cyril Dean. “The evolution of genetic systems.The Evolution of Genetic Systems. (1939).

June 12:

Akira, S. H. I. Z. U. O., T. O. S. H. I. O. Hirano, T. E. T. S. U. Y. A. Taga, and T. A. D. A. M. I. T. S. U. Kishimoto. “Biology of multifunctional cytokines: IL 6 and related molecules (IL 1 and TNF).The FASEB journal 4, no. 11 (1990): 2860-2867.

June 13:

Kishimoto, Tadamitsu, Shizuo Akira, Masashi Narazaki, and Tetsuya Taga. “Interleukin-6 family of cytokines and gp130.Blood 86, no. 4 (1995): 1243-1254.

June 14:

Alexander, Warren S., and Douglas J. Hilton. “The role of suppressors of cytokine signaling (SOCS) proteins in regulation of the immune response.Annu. Rev. Immunol. 22 (2004): 503-529.

June 15:

Brouwer, Jason M., Dana Westphal, Grant Dewson, Adeline Y. Robin, Rachel T. Uren, Ray Bartolo, Geoff V. Thompson, Peter M. Colman, Ruth M. Kluck, and Peter E. Czabotar. “Bak core and latch domains separate during activation, and freed core domains form symmetric homodimers.Molecular cell 55, no. 6 (2014): 938-946.

June 16:

Stafford, C. A., and U. Nachbur. “A NODding acquaintance with ER stress.” Cell Death Discovery 2 (2016).

June 17:

Nachbur, Ueli, Che A. Stafford, Aleksandra Bankovacki, Yifan Zhan, Lisa M. Lindqvist, Berthe K. Fiil, Yelena Khakham et al. “A RIPK2 inhibitor delays NOD signalling events yet prevents inflammatory cytokine production.” Nature communications 6 (2015).

June 18:

Sheridan, Julie M., Matthew E. Ritchie, Sarah A. Best, Kun Jiang, Tamara J. Beck, François Vaillant, Kevin Liu et al. “A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1.” BMC cancer 15, no. 1 (2015): 1.

June 19:

Alberts, Bruce. “On becoming a scientist.Science 326, no. 5955 (2009): 916-916.

June 20:

Witkowski, M. T., L. Cimmino, Y. Hu, T. Trimarchi, H. Tagoh, M. D. McKenzie, S. A. Best et al. “Activated Notch counteracts Ikaros tumor suppression in mouse and human T-cell acute lymphoblastic leukemia.” Leukemia 29, no. 6 (2015): 1301-1311.

June 21:

Wainer, Howard. “How to display data badly.” The American Statistician 38, no. 2 (1984): 137-147.

June 22:

DasGupta, Ramanuj, Ajamete Kaykas, Randall T. Moon, and Norbert Perrimon. “Functional genomic analysis of the Wnt-wingless signaling pathway.” Science 308, no. 5723 (2005): 826-833.

June 23:

Wang, Huayi, Liming Sun, Lijing Su, Josep Rizo, Lei Liu, Li-Feng Wang, Fu-Sheng Wang, and Xiaodong Wang. “Mixed lineage kinase domain-like protein MLKL causes necrotic membrane disruption upon phosphorylation by RIP3.Molecular cell 54, no. 1 (2014): 133-146.

June 24:

Croker, Ben A., Danielle L. Krebs, Jian-Guo Zhang, Sam Wormald, Tracy A. Willson, Edouard G. Stanley, Lorraine Robb et al. “SOCS3 negatively regulates IL-6 signaling in vivo.” Nature immunology 4, no. 6 (2003): 540-545.

June 25:

Pinker, Steven, Martin A. Nowak, and James J. Lee. “The logic of indirect speech.Proceedings of the National Academy of sciences 105, no. 3 (2008): 833-838.

June 26:

Bergamin, Elisa, Jinhua Wu, and Stevan R. Hubbard. “Structural basis for phosphotyrosine recognition by suppressor of cytokine signaling-3.Structure 14, no. 8 (2006): 1285-1292.

June 27:

Pinker, Steven, and Paul Bloom. “Natural language and natural selection.” Behavioral and brain sciences 13, no. 04 (1990): 707-727.

June 28:

Ramirez, Steve, Xu Liu, Pei-Ann Lin, Junghyup Suh, Michele Pignatelli, Roger L. Redondo, Tomás J. Ryan, and Susumu Tonegawa. “Creating a false memory in the hippocampus.” Science 341, no. 6144 (2013): 387-391.

June 29:

Wu, Chung-I., Norman A. Johnson, and Michael F. Palopoli. “Haldane’s rule and its legacy: Why are there so many sterile males?.Trends in Ecology & Evolution 11, no. 7 (1996): 281-284.

June 30:

Hershey, A. D., June Dixon, and Martha Chase. “NUCLEIC ACID ECONOMY IN BACTERIA INFECTED WITH BACTERIOPHAGE T2 I. PURINE AND PYRIMIDINE COMPOSITION.” The Journal of general physiology 36, no. 6 (1953): 777-789.