December: 366 papers in 2016

Dec 1:

Williams, Adam, Jorge Henao-Mejia, and Richard A. Flavell. “Editing the mouse genome using the CRISPR–Cas9 system.Cold Spring Harbor Protocols 2016, no. 2 (2016): pdb-top087536.

Dec 2:

Nicola, Nicos A., Warren S. Alexander, Douglas J. Hilton, and Ashley P. Ng. “In memoriam: Donald Metcalf (1929-2014)–A historical perspective of his contributions to hematology.Experimental hematology 43, no. 6 (2015): 425-427.

Dec 3:

Westerterp, Marit, Andrew J. Murphy, Mi Wang, Tamara A. Pagler, Yuliya Vengrenyuk, Mojdeh S. Kappus, Darren J. Gorman et al. “Deficiency of ATP-binding cassette transporters A1 and G1 in macrophages increases inflammation and accelerates atherosclerosis in mice.Circulation research 112, no. 11 (2013): 1456-1465.

Dec 4:

Baker, Paul J., Dave Boucher, Damien Bierschenk, Christina Tebartz, Paul G. Whitney, Damian B. D’Silva, Maria C. Tanzer et al. “NLRP3 inflammasome activation downstream of cytoplasmic LPS recognition by both caspase‐4 and caspase‐5.European journal of immunology 45, no. 10 (2015): 2918-2926.

Dec 5:

Kershaw, Nadia J., James M. Murphy, Nicholas PD Liau, Leila N. Varghese, Artem Laktyushin, Eden L. Whitlock, Isabelle S. Lucet, Nicos A. Nicola, and Jeffrey J. Babon. “SOCS3 binds specific receptor–JAK complexes to control cytokine signaling by direct kinase inhibition.Nature structural & molecular biology 20, no. 4 (2013): 469-476.

Dec 6:

Jenkins, Misty R., Jesse A. Rudd-Schmidt, Jamie A. Lopez, Kelly M. Ramsbottom, Stuart I. Mannering, Daniel M. Andrews, Ilia Voskoboinik, and Joseph A. Trapani. “Failed CTL/NK cell killing and cytokine hypersecretion are directly linked through prolonged synapse time.The Journal of experimental medicine 212, no. 3 (2015): 307-317.

Dec 7:

Berry, Richard, Stephen J. Headey, Melissa J. Call, James McCluskey, Clive A. Tregaskes, Jim Kaufman, Ruide Koh, Martin J. Scanlon, Matthew E. Call, and Jamie Rossjohn. “Structure of the Chicken CD3ϵδ/γ Heterodimer and Its Assembly with the αβT Cell Receptor.Journal of Biological Chemistry 289, no. 12 (2014): 8240-8251.

Dec 8:

Ernst, Christina, Jeremy Pike, Sarah J. Aitken, Hannah K. Long, Nils Eling, Lovorka Stojic, Michelle C. Ward et al. “Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis.eLife 5 (2016): e20235.

Dec 9:

Gibson, Daniel G., Hamilton O. Smith, Clyde A. Hutchison III, J. Craig Venter, and Chuck Merryman. “Chemical synthesis of the mouse mitochondrial genome.” nature methods 7, no. 11 (2010): 901-903.

Dec 10:

Bank, Claudia, Sebastian Matuszewski, Ryan T. Hietpas, and Jeffrey D. Jensen. “On the (un-) predictability of a large intragenic fitness landscape.bioRxiv (2016): 048769.

Dec 11:

Rosenfeld, Lior, Michael Heyne, Julia M. Shifman, and Niv Papo. “Protein Engineering by Combined Computational and In Vitro Evolution Approaches.Trends in biochemical sciences 41, no. 5 (2016): 421-433.

Dec 12:

Rost, Fabian, Aida Rodrigo Albors, Vladimir Mazurov, Lutz Brusch, Andreas Deutsch, Elly M. Tanaka, and Osvaldo Chara. “Accelerated cell divisions drive the outgrowth of the regenerating spinal cord in axolotls.eLife 5 (2016): e20357.

Dec 13:

Suto, Nobuyoshi, Amanda Laque, Genna L. De Ness, Grant E. Wagner, Debbie Watry, Tony Kerr, Eisuke Koya, Mark R. Mayford, Bruce T. Hope, and Friedbert Weiss. “Distinct memory engrams in the infralimbic cortex of rats control opposing environmental actions on a learned behavior.eLife 5 (2016): e21920.

Dec 14:

Alcock, Felicity, Phillip J. Stansfeld, Hajra Basit, Johann Habersetzer, Matthew AB Baker, Tracy Palmer, Mark I. Wallace, and Ben C. Berks. “Assembling the Tat protein translocase.eLife 5 (2016): e20718.

Dec 15:

Wells, Michael F., Max R. Salick, Ole Wiskow, Daniel J. Ho, Kathleen A. Worringer, Robert J. Ihry, Sravya Kommineni et al. “Genetic ablation of AXL does not protect human neural progenitor cells and cerebral organoids from Zika virus infection.Cell Stem Cell 19, no. 6 (2016): 703-708.

Dec 16:

Hutchison, Clyde A., Ray-Yuan Chuang, Vladimir N. Noskov, Nacyra Assad-Garcia, Thomas J. Deerinck, Mark H. Ellisman, John Gill et al. “Design and synthesis of a minimal bacterial genome.Science 351, no. 6280 (2016): aad6253.

Dec 17:

Telenti, Amalio, Levi CT Pierce, William H. Biggs, Julia di Iulio, Emily HM Wong, Martin M. Fabani, Ewen F. Kirkness et al. “Deep sequencing of 10,000 human genomes.Proceedings of the National Academy of Sciences (2016): 201613365.

Dec 18:

Zahn, Laura M., P. Mickey Williams, Jeremy P. Segal, Itay Tirosh, Benjamin Izar, Sanjay M. Prakadan, Marc H. Wadsworth II et al. “Single-cell expression profiles of melanoma.Science 183 (2016): 185.

Dec 19:

Telenti, Amalio, Brad A. Perkins, and J. Craig Venter. “Dynamics of an aging genome.Cell Metabolism 23, no. 6 (2016): 949-950.

Dec 20:

Vinson, Valda, Denes Hnisz, Abraham S. Weintraub, Daniel S. Day, Anne-Laure Valton, Rasmus O. Bak, Charles H. Li et al. “A proton pump in action.Science 351, no. 6280 (2016): 1411-1413.

Dec 21:

Tabebordbar, Mohammadsharif, Kexian Zhu, Jason KW Cheng, Wei Leong Chew, Jeffrey J. Widrick, Winston X. Yan, Claire Maesner et al. “In vivo gene editing in dystrophic mouse muscle and muscle stem cells.” Science 351, no. 6271 (2016): 407-411.

Dec 22:

Session, Adam M., Yoshinobu Uno, Taejoon Kwon, Jarrod A. Chapman, Atsushi Toyoda, Shuji Takahashi, Akimasa Fukui et al. “Genome evolution in the allotetraploid frog Xenopus laevis.Nature 538, no. 7625 (2016): 336-343.

Dec 23:

Chavez, Alejandro, Marcelle Tuttle, Benjamin W. Pruitt, Ben Ewen-Campen, Raj Chari, Dmitry Ter-Ovanesyan, Sabina J. Haque et al. “Comparative Analysis of Cas9 Activators Across Multiple Species.” (2016).

Dec 24:

Zhirnov, Victor, Reza M. Zadegan, Gurtej S. Sandhu, George M. Church, and William L. Hughes. “Nucleic acid memory.” Nature materials 15, no. 4 (2016): 366-370.

Dec 25:

Ostrov, Nili, Matthieu Landon, Marc Guell, Gleb Kuznetsov, Jun Teramoto, Natalie Cervantes, Minerva Zhou et al. “Design, synthesis, and testing toward a 57-codon genome.Science 353, no. 6301 (2016): 819-822.

Dec 26:

Shipman, Seth L., Jeff Nivala, Jeffrey D. Macklis, and George M. Church. “Molecular recordings by directed CRISPR spacer acquisition.Science (2016): aaf1175.

Dec 27:

Stranges, P. Benjamin, Mirkó Palla, Sergey Kalachikov, Jeff Nivala, Michael Dorwart, Shiv Kumar, Mintu Porel et al. “Design and characterization of a nanopore-coupled polymerase for single-molecule DNA sequencing by synthesis on an electrode array.Proceedings of the National Academy of Sciences 113, no. 44 (2016): E6749-E6756.

Dec 28:

Fuller, Carl W., Shiv Kumar, Mintu Porel, Minchen Chien, Arek Bibillo, P. Benjamin Stranges, Michael Dorwart et al. “Real-time single-molecule electronic DNA sequencing by synthesis using polymer-tagged nucleotides on a nanopore array.Proceedings of the National Academy of Sciences 113, no. 19 (2016): 5233-5238.

Dec 29:

Deamer, David, Mark Akeson, and Daniel Branton. “Three decades of nanopore sequencing.Nature biotechnology 34, no. 5 (2016): 518-524.

Dec 30:

Kasianowicz, John J., and Sergey M. Bezrukov. “On’three decades of nanopore sequencing’.” Nature biotechnology 34, no. 5 (2016): 481-482.

Dec 31:

van Gent, Dik C., and Roland Kanaar. “Exploiting DNA repair defects for novel cancer therapies.Molecular Biology of the Cell 27, no. 14 (2016): 2145-2148.



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