As one of my 2016 scientific resolutions I will be reading one paper every day of the year and posting each here (hopefully) daily. Along with me, Natalie Matosin, Martin Engel and Lauren Drogos will also be doing the same and likewise posting each paper on their respective blogs. You can also follow the three of us and the others who are joining us using the tag #366papers on twitter.
Grimes, David Robert. “Proposed mechanisms for homeopathy are physically impossible.” Focus on Alternative and Complementary Therapies 17, no. 3 (2012): 149-155.
Booker, Tom, Rob W. Ness, and Deborah Charlesworth. “Molecular Evolution: Breakthroughs and Mysteries in Batesian Mimicry.” Current Biology 25, no. 12 (2015): R506-R508.
Kristensen, Niels P., Douglas J. Hilton, Axel Kallies, Liz Milla, Jadranka Rota, Niklas Wahlberg, Stephen A. Wilcox et al. “A new extant family of primitive moths from Kangaroo Island, Australia, and its significance for understanding early Lepidoptera evolution.” Systematic Entomology 40, no. 1 (2015): 5-16.
Coyne, Jerry A. “The genetic basis of Haldane’s rule.” Nature 314, no. 6013 (1984): 736-738.
Trenker, Raphael, Matthew E. Call, and Melissa J. Call. “Crystal Structure of the Glycophorin A Transmembrane Dimer in Lipidic Cubic Phase.” Journal of the American Chemical Society 137, no. 50 (2015): 15676-15679.
Chen, Sidi, Neville E. Sanjana, Kaijie Zheng, Ophir Shalem, Kyungheon Lee, Xi Shi, David A. Scott et al. “Genome-wide CRISPR screen in a mouse model of tumor growth and metastasis.” Cell 160, no. 6 (2015): 1246-1260.
Tai, Andrew W., Yair Benita, Lee F. Peng, Sun-Suk Kim, Naoya Sakamoto, Ramnik J. Xavier, and Raymond T. Chung. “A functional genomic screen identifies cellular cofactors of hepatitis C virus replication.” Cell host & microbe 5, no. 3 (2009): 298.
Shalem, Ophir, Neville E. Sanjana, Ella Hartenian, Xi Shi, David A. Scott, Tarjei S. Mikkelsen, Dirk Heckl et al. “Genome-scale CRISPR-Cas9 knockout screening in human cells.” Science 343, no. 6166 (2014): 84-87.
Zhou, Yuexin, Shiyou Zhu, Changzu Cai, Pengfei Yuan, Chunmei Li, Yanyi Huang, and Wensheng Wei. “High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells.” Nature 509, no. 7501 (2014): 487-491.
Crick, Francis HC, and James D. Watson. “The complementary structure of deoxyribonucleic acid.” In Proceedings of the Royal Society of London A: Mathematical, Physical and Engineering Sciences, vol. 223, no. 1152, pp. 80-96. The Royal Society, 1954.
Domazet-Lošo, Tomislav, and Diethard Tautz. “A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns.” Nature 468, no. 7325 (2010): 815-818.
Koonin, Eugene V. “Comparative genomics, minimal gene-sets and the last universal common ancestor.” Nature Reviews Microbiology 1, no. 2 (2003): 127-136.
Ciccarelli, Francesca D., Tobias Doerks, Christian Von Mering, Christopher J. Creevey, Berend Snel, and Peer Bork. “Toward automatic reconstruction of a highly resolved tree of life.” science 311, no. 5765 (2006): 1283-1287.
Krebs, H. A., R. N. Speake, and R. Hems. “Acceleration of renal gluconeogenesis by ketone bodies and fatty acids.” Biochemical Journal 94, no. 3 (1965): 712.
Lespinet, Olivier, Yuri I. Wolf, Eugene V. Koonin, and L. Aravind. “The role of lineage-specific gene family expansion in the evolution of eukaryotes.” Genome research 12, no. 7 (2002): 1048-1059.
Ku, Chuan, Shijulal Nelson-Sathi, Mayo Roettger, Filipa L. Sousa, Peter J. Lockhart, David Bryant, Einat Hazkani-Covo, James O. McInerney, Giddy Landan, and William F. Martin. “Endosymbiotic origin and differential loss of eukaryotic genes.” Nature 524, no. 7566 (2015): 427-432.
Ritchie, Matthew E., Belinda Phipson, Di Wu, Yifang Hu, Charity W. Law, Wei Shi, and Gordon K. Smyth. “limma powers differential expression analyses for RNA-sequencing and microarray studies.” Nucleic acids research (2015): gkv007.
Horlbeck, Max A., Lea B. Witkowsky, Benjamin Guglielmi, Joseph M. Replogle, Luke A. Gilbert, Jacqueline E. Villalta, Sharon E. Torigoe, Robert Tijan, and Jonathan S. Weissman. “Nucleosomes impede Cas9 access to DNA in vivo and in vitro.” eLife 5 (2016): e12677.
Supple, Megan A., Riccardo Papa, Heather M. Hines, W. Owen McMillan, and Brian A. Counterman. “Divergence with gene flow across a speciation continuum of Heliconius butterflies.” BMC evolutionary biology 15, no. 1 (2015): 204.
Sork, Victoria L. “Gene flow and natural selection shape spatial patterns of genes in tree populations: implications for evolutionary processes and applications.” Evolutionary Applications 9, no. 1 (2016): 291-310.
Pishesha, Novalia, Prathapan Thiru, Jiahai Shi, Jennifer C. Eng, Vijay G. Sankaran, and Harvey F. Lodish. “Transcriptional divergence and conservation of human and mouse erythropoiesis.” Proceedings of the National Academy of Sciences 111, no. 11 (2014): 4103-4108.
Pires-daSilva, André, and Ralf J. Sommer. “The evolution of signalling pathways in animal development.” Nature Reviews Genetics 4, no. 1 (2003): 39-49.
Vaux, David L. “Basic statistics in cell biology.” Annual review of cell and developmental biology 30 (2014): 23-37.
Lazcano, Antonio, and Stanley L. Miller. “The origin and early evolution of life: prebiotic chemistry, the pre-RNA world, and time.” Cell 85, no. 6 (1996): 793-798.
Iismaa, Tiina P., and John Shine. “G protein-coupled receptors.” Current opinion in cell biology 4, no. 2 (1992): 195-202.
Kershaw, Nadia J., James M. Murphy, Isabelle S. Lucet, Nicos A. Nicola, and Jeffrey J. Babon. “Regulation of Janus kinases by SOCS proteins.” Biochemical Society Transactions 41, no. 4 (2013): 1042-1047.
Vaux, David L. “Research methods: Know when your numbers are significant.” Nature 492, no. 7428 (2012): 180-181.
Berthelot, Camille, Frédéric Brunet, Domitille Chalopin, Amélie Juanchich, Maria Bernard, Benjamin Noël, Pascal Bento et al. “The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.” Nature communications 5 (2014).
Carey, Lucas B. “RNA polymerase errors cause splicing defects and can be regulated by differential expression of RNA polymerase subunits.” eLife 4 (2015): e09945.
Eyers, Patrick A. “TRIBBLES: A Twist in the Pseudokinase Tail.” Structure 23, no. 11 (2015): 1974-1976.