As one of my 2016 scientific resolutions I will be reading one paper every day of the year and posting each here (hopefully) daily. Along with me, Natalie Matosin, Martin Engel and Lauren Drogos will also be doing the same and likewise posting each paper on their respective blogs. You can also follow the three of us and the others who are joining us using the tag #366papers on twitter.
Sadownik, Jan W., Elio Mattia, Piotr Nowak, and Sijbren Otto. “Diversification of self-replicating molecules.” Nature Chemistry (2016).
Bernhardt, Harold S., and Wayne M. Patrick. “Genetic code evolution started with the incorporation of glycine, followed by other small hydrophilic amino acids.” Journal of molecular evolution 78, no. 6 (2014): 307-309.
Tsai, Yu-Hsuan, Sebastian Essig, John R. James, Kathrin Lang, and Jason W. Chin. “Selective, rapid and optically switchable regulation of protein function in live mammalian cells.” Nature chemistry 7, no. 7 (2015): 554.
Posadzki, Paul, Leala Watson, and Edzard Ernst. “Contamination and adulteration of herbal medicinal products (HMPs): an overview of systematic reviews.” European journal of clinical pharmacology 69, no. 3 (2013): 295-307.
Farasat, I., and H. M. Salis. “A Biophysical Model of CRISPR/Cas9 Activity for Rational Design of Genome Editing and Gene Regulation.” PLoS computational biology 12, no. 1 (2016): e1004724-e1004724.
Freeland, Stephen J., Robin D. Knight, Laura F. Landweber, and Laurence D. Hurst. “Early fixation of an optimal genetic code.” Molecular Biology and Evolution 17, no. 4 (2000): 511-518.
Wilson, William C., Hue-Tran Hornig-Do, Francesco Bruni, Jeong Ho Chang, Alexis A. Jourdain, Jean-Claude Martinou, Maria Falkenberg et al. “A human mitochondrial poly (A) polymerase mutation reveals the complexities of post-transcriptional mitochondrial gene expression.” Human molecular genetics 23, no. 23 (2014): 6345-6355.
Murphy, Andrew J., Michael J. Kraakman, Helene L. Kammoun, Dragana Dragoljevic, Man KS Lee, Kate E. Lawlor, John M. Wentworth et al. “IL-18 Production from the NLRP1 Inflammasome Prevents Obesity and Metabolic Syndrome.” Cell metabolism 23, no. 1 (2016): 155-164.
Feng, Justin, Benjamin W. Jester, Christine E. Tinberg, Daniel J. Mandell, Mauricio S. Antunes, Raj Chari, Kevin J. Morey et al. “A general strategy to construct small molecule biosensors in eukaryotes.” eLife (2015): e10606.
Anderson, Douglas P., Dustin S. Whitney, Victor Hanson-Smith, Arielle Woznica, William Campodonico-Burnett, Brian F. Volkman, Nicole King, Kenneth E. Prehoda, and Joseph W. Thornton. “Evolution of an ancient protein function involved in organized multicellularity in animals.” eLife 5 (2016): e10147.
Floor, Stephen N., and Jennifer A. Doudna. “Tunable protein synthesis by transcript isoforms in human cells.” eLife (2016): e10921.
Curry, Fitz-Roy E. “Drug delivery: Redefining tumour vascular barriers.” Nature Nanotechnology (2016).
Bonning, Bryony C., Narinder Pal, Sijun Liu, Zhaohui Wang, S. Sivakumar, Philip M. Dixon, Glenn F. King, and W. Allen Miller. “Toxin delivery by the coat protein of an aphid-vectored plant virus provides plant resistance to aphids.” Nature biotechnology 32, no. 1 (2014): 102-105.
Albors, Aida Rodrigo, Akira Tazaki, Fabian Rost, Sergej Nowoshilow, Osvaldo Chara, and Elly M. Tanaka. “Planar cell polarity-mediated induction of neural stem cell expansion during axolotl spinal cord regeneration.” eLife (2015): e10230.
Jin, Jin, Xiaoping Xie, Yichuan Xiao, Hongbo Hu, Qiang Zou, Xuhong Cheng, and Shao-Cong Sun. “Epigenetic regulation of the expression of Il12 and Il23 and autoimmune inflammation by the deubiquitinase Trabid.” Nature immunology (2016).
Zhao, Jinghui, Gonzalo A. Garcia, and Alfred L. Goldberg. “Control of proteasomal proteolysis by mTOR.” Nature 529, no. 7586 (2016): E1-E2.
Liu, Zhihua, Jinwoo Lee, Scott Krummey, Wei Lu, Huaibin Cai, and Michael J. Lenardo. “The kinase LRRK2 is a regulator of the transcription factor NFAT that modulates the severity of inflammatory bowel disease.” Nature immunology 12, no. 11 (2011): 1063-1070.
Coghlan, Megan L., Garth Maker, Elly Crighton, James Haile, Dáithí C. Murray, Nicole E. White, Roger W. Byard et al. “Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM).” Scientific reports 5 (2015).
Atsak, Piray, Friederike M. Guenzel, Deniz Kantar-Gok, Ioannis Zalachoras, Piraye Yargicoglu, Onno C. Meijer, Gina L. Quirarte, Oliver T. Wolf, Lars Schwabe, and Benno Roozendaal. “Glucocorticoids mediate stress-induced impairment of retrieval of stimulus− response memory.” Psychoneuroendocrinology (2016).
Murphy, Andrew J., Nora Bijl, Laurent Yvan-Charvet, Carrie B. Welch, Neha Bhagwat, Adili Reheman, Yiming Wang et al. “Cholesterol efflux in megakaryocyte progenitors suppresses platelet production and thrombocytosis.” Nature medicine 19, no. 5 (2013): 586-594.
Champer, Jackson, Anna Buchman, and Omar S. Akbari. “Cheating evolution: engineering gene drives to manipulate the fate of wild populations.” Nature Reviews Genetics 17, no. 3 (2016): 146-159.
Lai, Andicus, Paloma M. Sato, and Sergio G. Peisajovich. “Evolution of Synthetic Signaling Scaffolds by Recombination of Modular Protein Domains.” ACS synthetic biology 4, no. 6 (2015): 714-722.
Bee, Thomas, Emma LK Ashley, Sorrel RB Bickley, Andrew Jarratt, Pik-Shan Li, Jackie Sloane-Stanley, Berthold Göttgens, and Marella FTR de Bruijn. “The mouse Runx1+ 23 hematopoietic stem cell enhancer confers hematopoietic specificity to both Runx1 promoters.” Blood 113, no. 21 (2009): 5121-5124.
Krebs, Danielle L., and Douglas J. Hilton. “SOCS proteins: negative regulators of cytokine signaling.” Stem cells 19, no. 5 (2001): 378-387.
Bardwell, Lee. “A walk-through of the yeast mating pheromone response pathway.” Peptides 26, no. 2 (2005): 339-350.
Zhang, Fan, Yang Li, Zhongshu Tang, Anil Kumar, Chunsik Lee, Liping Zhang, Chaoyong Zhu et al. “Proliferative and survival effects of PUMA promote angiogenesis.” Cell reports 2, no. 5 (2012): 1272-1285.
Scotti, Marina M., and Maurice S. Swanson. “RNA mis-splicing in disease.” Nature Reviews Genetics 17, no. 1 (2016): 19-32.